5Z9Y image
Deposition Date 2018-02-05
Release Date 2018-04-11
Last Version Date 2025-04-09
Entry Detail
PDB ID:
5Z9Y
Keywords:
Title:
Crystal structure of Mycobacterium tuberculosis thiazole synthase (ThiG) complexed with DXP
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.48 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Thiazole synthase
Gene (Uniprot):thiG
Chain IDs:A, B
Chain Length:252
Number of Molecules:2
Biological Source:Mycobacterium tuberculosis H37Rv
Ligand Molecules
Primary Citation
Snapshots of catalysis: Structure of covalently bound substrate trapped in Mycobacterium tuberculosis thiazole synthase (ThiG).
Biochem. Biophys. Res. Commun. 497 214 219 (2018)
PMID: 29428731 DOI: 10.1016/j.bbrc.2018.02.056

Abstact

Increasing drug resistance in Mycobacterium tuberculosis (Mtb) has necessitated the design of new anti-mycobacterial drugs with novel targets. Thiazole synthase (ThiG) is an essential enzyme and a potential drug target in Mtb that catalyzes the formation of the thiazole moiety of thiamin-pyrophosphate from 1-deoxy-d-xylulose-5-phosphate (DXP), dehydroglycine and ThiS-thiocarboxylate. To uncover the catalysis mechanism and design potent and selective anti-mycobacterial compounds targeting ThiG, we determined the crystal structure of MtbThiG at 1.5 Å resolution, for the first time, snapshotting a covalently bound substrate trapped in the catalytic pocket. The structure showed a (β/α)8 barrel overall fold as well as the dimer form of MtbThiG existing in solution. In the central pocket, Lys98 is the key residue forming a protonated carbinolamine intermediate, a functional Schiff base precursor, with DXP. The carbinolamine is further stabilized by active site residues mainly through hydrogen bonds. This work revealed that a protonated carbinolamine is initially formed and then it is dehydrated to the imine form of Schiff base during the early catalysis steps. Our research will provide useful information for understanding the ThiG function and lay the basis for future drug design by targeting this essential protein.

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Primary Citation of related structures