5Z6P image
Deposition Date 2018-01-24
Release Date 2019-01-02
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5Z6P
Keywords:
Title:
The crystal structure of an agarase, AgWH50C
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.06 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:B-agarase
Chain IDs:A, B
Chain Length:765
Number of Molecules:2
Biological Source:Agarivorans gilvus
Primary Citation
Structure-based design of agarase AgWH50C from Agarivorans gilvus WH0801 to enhance thermostability.
Appl. Microbiol. Biotechnol. 103 1289 1298 (2019)
PMID: 30523371 DOI: 10.1007/s00253-018-9540-1

Abstact

AgWH50C, an exo-β-agarase of GH50 isolated from Agarivorans gilvus WH0801, plays a key role in the enzymatic production of neoagarobiose, which has great application prospect in the cosmetics and pharmaceutical industry. In contrast, the poor thermostability becomes the main obstructive factor of glycoside hydrolase (GH) family 50 agarases, including AgWH50C. Herein, based on the AgWH50C crystal structure, we designed several mutants by a multiple cross-linked rational design protocol used thermostability predicting softwares ETSS, PoPMuSiC, and HotMuSiC. To our surprise, the mutant K621F increased its relative activity by as much as 45% and the optimal temperature increased to 38 °C compared to that of wild-type, AgWH50C (30 °C). The thermostability of K621F also exhibited a substantial improvement. Considering that the gelling temperature of the agarose is higher than 35 °C, K621F can be used to hydrolyze agarose for neoagarobiose production.

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Primary Citation of related structures
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