5Z5K image
Deposition Date 2018-01-18
Release Date 2018-06-20
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5Z5K
Title:
Structure of the DCC-Draxin complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.49 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 65
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Netrin receptor DCC
Gene (Uniprot):Dcc
Chain IDs:A
Chain Length:380
Number of Molecules:1
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Molecule:Draxin
Gene (Uniprot):Draxin
Chain IDs:B
Chain Length:66
Number of Molecules:1
Biological Source:Rattus norvegicus
Ligand Molecules
Primary Citation
Structural Basis for Draxin-Modulated Axon Guidance and Fasciculation by Netrin-1 through DCC.
Neuron 97 1261 1267.e4 (2018)
PMID: 29503192 DOI: 10.1016/j.neuron.2018.02.010

Abstact

Axon guidance involves the spatiotemporal interplay between guidance cues and membrane-bound cell-surface receptors, present on the growth cone of the axon. Netrin-1 is a prototypical guidance cue that binds to deleted in colorectal cancer (DCC), and it has been proposed that the guidance cue Draxin modulates this interaction. Here, we present structural snapshots of Draxin/DCC and Draxin/Netrin-1 complexes, revealing a triangular relationship that affects Netrin-mediated haptotaxis and fasciculation. Draxin interacts with DCC through the N-terminal four immunoglobulin domains, and Netrin-1 through the EGF-3 domain, in the same region where DCC binds. Netrin-1 and DCC bind to adjacent sites on Draxin, which appears to capture Netrin-1 and tether it to the DCC receptor. We propose the conformational flexibility of the single-pass membrane receptor DCC is used to promote fasciculation and regulate axon guidance through concerted Netrin-1/Draxin binding. VIDEO ABSTRACT.

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Primary Citation of related structures