5Z2L image
Deposition Date 2018-01-03
Release Date 2018-03-07
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5Z2L
Keywords:
Title:
Crystal structure of BdcA in complex with NADPH
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cyclic-di-GMP-binding biofilm dispersal mediator protein
Gene (Uniprot):bdcA
Chain IDs:A, B (auth: D), C (auth: B), D (auth: C), E, F (auth: J), G (auth: H), H (auth: K), I, J (auth: F), K (auth: G), L
Chain Length:245
Number of Molecules:12
Biological Source:Escherichia coli (strain K12)
Primary Citation
A potential substrate binding pocket of BdcA plays a critical role in NADPH recognition and biofilm dispersal
Biochem. Biophys. Res. Commun. 497 863 868 (2018)
PMID: 29462616 DOI: 10.1016/j.bbrc.2018.02.143

Abstact

Biofilm dispersal is characterized by the cell detachment from biofilms and expected to provide novel "anti-biofilm" approaches of prevention and treatment of biofilms in clinical and industrial settings. The E.coli protein BdcA has been identified as a biofilm dispersal factor and designed to be an important component in engineered applications to control biofilm formation. It belongs to short-chain dehydrogenase/reductase (SDR) family with the specific affinity to NADPH. Here, we show the structure of BdcA in complex with NADPH and confirm that NADPH binding is requisite for BdcA facilitating cell motility and increasing biofilm dispersal. Especially, we observe a potential substrate binding pocket surrounded by hydrophobic residues upon NADPH binding and present evidences that this pocket is essential for BdcA binding NADPH and exerting its biological functions. Our study provides the clues for illuminating the molecular mechanism of BdcA regulating biofilm dispersal and better utilizing BdcA to eliminate the biofilms.

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