ISDA

Deposition Date 2017-12-25

Release Date 2018-12-12

Last Version Date 2024-03-27

Entry Detail

PDB ID:

5Z19

Keywords:

HYDROLASE

Title:

The crystal structure of Ruminococcus gnavus beta-glucuronidase in complex with uronic isofagomine

Biological Source:

Source Organism:

[Ruminococcus] gnavus (Taxon ID: 33038)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.50 Å

R-Value Free:

0.20

R-Value Work:

0.16

R-Value Observed:

0.16

Space Group:

C 1 2 1

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Beta-glucuronidase
Gene (Uniprot):uidA
Mutations:D290Q, G373A
Chain IDs:A, B, C, D, E, F
Chain Length:627
Number of Molecules:6
Biological Source:[Ruminococcus] gnavus

UniProt ID:Q6W7J7 Pfam ID:PF02837, PF00703, PF02836 EC:3.2.1.31

Ligand Molecules

SJ5

Primary Citation

Dissection of the substrate preference and structure of gut microbial beta-glucuronidases identifies the major bacteria causing xenobiotic toxicity

Dashnyam, P, Mudududdla, R, Hsieh, T.J, Lin, T.C, Lin, H.Y, Chen, P.Y, Hsu, C.Y, Lin, C.H.Show

To Be Published ? ? ? (?)

Primary Citation of related structures