5YXO image
Deposition Date 2017-12-06
Release Date 2018-06-20
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5YXO
Keywords:
Title:
Crystal structure of shaft pilin spaD from Lactobacillus rhamnosus GG in bent conformation
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.51 Å
R-Value Free:
0.29
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Pilus assembly protein
Chain IDs:A
Chain Length:465
Number of Molecules:1
Biological Source:Lactobacillus rhamnosus GG
Primary Citation
Bent conformation of a backbone pilin N-terminal domain supports a three-stage pilus assembly mechanism.
Commun Biol 1 94 94 (2018)
PMID: 30271975 DOI: 10.1038/s42003-018-0100-0

Abstact

Effective colonization of host cells by some Gram-positive bacteria often involves using lengthy, adhesive macromolecular structures called sortase-dependent pili. Among commensals, the gut-adapted Lactobacillus rhamnosus GG strain encodes the operons for two varieties of these pili (SpaCBA and SpaFED), with each structure consisting of backbone, tip, and basal pilin subunits. Although the tertiary structure was recently solved for the backbone subunit (SpaA) of the SpaCBA pilus, no structural information exists for its counterpart in the SpaFED pilus. Here, we report several crystal structures for the SpaD backbone pilin, two of which capture the N-terminal domain in either the closed (linear) or open (bent) conformation. To our knowledge, this is the first observation of the bent conformation in Gram-positive pilin structures. Based on this bent conformation, we suggest a three-stage model, which we call the expose-ligate-seal mechanism, for the docking and assembly of backbone pilins into the sortase-dependent pilus.

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