5YV5 image
Deposition Date 2017-11-24
Release Date 2018-07-18
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5YV5
Keywords:
Title:
Crystal structure of the complex of archaeal ribosomal stalk protein aP1 and archaeal ribosome recycling factor aABCE1.
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATPase RIL
Gene (Uniprot):PFC_02505
Chain IDs:A
Chain Length:536
Number of Molecules:1
Biological Source:Pyrococcus furiosus COM1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Archaeal ribosomal stalk protein aP1
Chain IDs:B
Chain Length:18
Number of Molecules:1
Biological Source:Pyrococcus furiosus
Primary Citation
The ribosomal stalk protein is crucial for the action of the conserved ATPase ABCE1
Nucleic Acids Res. 46 7820 7830 (2018)
PMID: 30010948 DOI: 10.1093/nar/gky619

Abstact

The ATP-binding cassette (ABC) protein ABCE1 is an essential factor in ribosome recycling during translation. However, the detailed mechanochemistry of its recruitment to the ribosome, ATPase activation and subunit dissociation remain to be elucidated. Here, we show that the ribosomal stalk protein, which is known to participate in the actions of translational GTPase factors, plays an important role in these events. Biochemical and crystal structural data indicate that the conserved hydrophobic amino acid residues at the C-terminus of the archaeal stalk protein aP1 binds to the nucleotide-binding domain 1 (NBD1) of aABCE1, and that this binding is crucial for ATPase activation of aABCE1 on the ribosome. The functional role of the stalk•ABCE1 interaction in ATPase activation and the subunit dissociation is also investigated using mutagenesis in a yeast system. The data demonstrate that the ribosomal stalk protein likely participates in efficient actions of both archaeal and eukaryotic ABCE1 in ribosome recycling. The results also show that the stalk protein has a role in the function of ATPase as well as GTPase factors in translation.

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Primary Citation of related structures
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