5YU7 image
Entry Detail
PDB ID:
5YU7
Title:
CRYSTAL STRUCTURE OF EXPORTIN-5
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-11-20
Release Date:
2018-08-29
Method Details:
Experimental Method:
Resolution:
3.30 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 64
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Exportin-5
Chain IDs:A
Chain Length:1204
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural Basis for Selective Binding of Export Cargoes by Exportin-5
Structure 26 1393 1398.e2 (2018)
PMID: 30100359 DOI: 10.1016/j.str.2018.06.014

Abstact

In the nucleus, RanGTP binding to importin dissociates the cargo. On the other hand, RanGTP enables exportin to bind export cargo and form the export complex by each exportin's own cargo selection mechanism. Here, we present two X-ray structures for Exportin-5 (Exp-5) alone and Exp-5:RanGTP intermediate complex. The structure of Exp-5 adopts a ring-shaped closed conformation by C-terminal anchor residues 1,167-1,179, interacting with N-terminal heat repeats 4-9. The closed form of Exp-5 is important for the stability of the cargo-free state. Interaction between Exp-5 and RanGTP induces elimination of intramolecular contacts of the C-terminal anchor. A large movement of N-terminal 1-9th heat repeats and C-terminal 19-20th heat repeats creates an open space for RanGTP accommodation. Exp-5 in Exp-5:RanGTP and Exp-5:RanGTP:pre-miRNA adopts the same conformation. RanGTP binding to Exp-5 creates a selective molecular cage area for accepting its cargoes, such as small double-stranded RNAs, without conformational change in Exp-5:RanGTP.

Legend

Protein

Chemical

Disease

Primary Citation of related structures