5YSW image
Deposition Date 2017-11-15
Release Date 2018-07-04
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5YSW
Keywords:
Title:
Crystal Structure Analysis of Rif16 in complex with R-L
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.27
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome P450
Gene (Uniprot):AMED_0653
Chain IDs:A
Chain Length:441
Number of Molecules:1
Biological Source:Amycolatopsis mediterranei (strain U-32)
Primary Citation
Deciphering the late steps of rifamycin biosynthesis.
Nat Commun 9 2342 2342 (2018)
PMID: 29904078 DOI: 10.1038/s41467-018-04772-x

Abstact

Rifamycin-derived drugs, including rifampin, rifabutin, rifapentine, and rifaximin, have long been used as first-line therapies for the treatment of tuberculosis and other deadly infections. However, the late steps leading to the biosynthesis of the industrially important rifamycin SV and B remain largely unknown. Here, we characterize a network of reactions underlying the biosynthesis of rifamycin SV, S, L, O, and B. The two-subunit transketolase Rif15 and the cytochrome P450 enzyme Rif16 are found to mediate, respectively, a unique C-O bond formation in rifamycin L and an atypical P450 ester-to-ether transformation from rifamycin L to B. Both reactions showcase interesting chemistries for these two widespread and well-studied enzyme families.

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