5YSS image
Deposition Date 2017-11-15
Release Date 2018-10-31
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5YSS
Keywords:
Title:
Crystal structure of aminocaproic acid cyclase in complex with NAD (+)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.28 Å
R-Value Free:
0.27
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:3-hydroxybutyrate dehydrogenase
Gene (Uniprot):AI2602V1_2506, AI2935V1_2583, AM363_15440, HV178_12180, IF853_22795, KV121_000458, KY227_001853, O4000_12210, P7U51_003781, PQQ21_004587, RYZ67_12930, SGX49_004535, TO64_00155
Chain IDs:A, B, C, D
Chain Length:256
Number of Molecules:4
Biological Source:Citrobacter freundii
Ligand Molecules
Primary Citation
A synthetic microbial biosensor for high-throughput screening of lactam biocatalysts
Nat Commun 9 5053 5053 (2018)
PMID: 30498220 DOI: 10.1038/s41467-018-07488-0

Abstact

Biocatalytic cyclization is highly desirable for efficient synthesis of biologically derived chemical substances, such as the commodity chemicals ε-caprolactam and δ-valerolactam. To identify biocatalysts in lactam biosynthesis, we develop a caprolactam-detecting genetic enzyme screening system (CL-GESS). The Alcaligenes faecalis regulatory protein NitR is adopted for the highly specific detection of lactam compounds against lactam biosynthetic intermediates. We further systematically optimize the genetic components of the CL-GESS to enhance sensitivity, achieving 10-fold improvement. Using this highly sensitive GESS, we screen marine metagenomes and find an enzyme that cyclizes ω-amino fatty acids to lactam. Moreover, we determine the X-ray crystal structure and catalytic residues based on mutational analysis of the cyclase. The cyclase is also used as a helper enzyme to sense intracellular ω-amino fatty acids. We expect this simple and accurate biosensor to have wide-ranging applications in rapid screening of new lactam-synthesizing enzymes and metabolic engineering for lactam bio-production.

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Disease

Primary Citation of related structures