5YRN image
Entry Detail
PDB ID:
5YRN
EMDB ID:
Keywords:
Title:
Structure of RIP2 CARD domain
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-11-09
Release Date:
2018-11-14
Method Details:
Experimental Method:
Resolution:
4.10 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Receptor-interacting serine/threonine-protein kinase 2
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:111
Number of Molecules:12
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural basis of RIP2 activation and signaling.
Nat Commun 9 4993 4993 (2018)
PMID: 30478312 DOI: 10.1038/s41467-018-07447-9

Abstact

Signals arising from bacterial infections are detected by pathogen recognition receptors (PRRs) and are transduced by specialized adapter proteins in mammalian cells. The Receptor-interacting-serine/threonine-protein kinase 2 (RIPK2 or RIP2) is such an adapter protein that is critical for signal propagation of the Nucleotide-binding-oligomerization-domain-containing proteins 1/2 (NOD1 and NOD2). Dysregulation of this signaling pathway leads to defects in bacterial detection and in some cases autoimmune diseases. Here, we show that the Caspase-activation-and-recruitment-domain (CARD) of RIP2 (RIP2-CARD) forms oligomeric structures upon stimulation by either NOD1-CARD or NOD2-2CARD. We reconstitute this complex, termed the RIPosome in vitro and solve the cryo-EM filament structure of the active RIP2-CARD complex at 4.1 Å resolution. The structure suggests potential mechanisms by which CARD domains from NOD1 and NOD2 initiate the oligomerization process of RIP2-CARD. Together with structure guided mutagenesis experiments at the CARD-CARD interfaces, we demonstrate molecular mechanisms how RIP2 is activated and self-propagating such signal.

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