5YQ7 image
Deposition Date 2017-11-05
Release Date 2018-05-02
Last Version Date 2025-06-25
Entry Detail
PDB ID:
5YQ7
Keywords:
Title:
Cryo-EM structure of the RC-LH core complex from Roseiflexus castenholzii
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
4.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome subunit of photosynthetic reaction center
Gene (Uniprot):pufC
Chain IDs:J (auth: C)
Chain Length:320
Number of Molecules:1
Biological Source:Roseiflexus castenholzii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta subunit of light-harvesting 1
Gene (Uniprot):pufB
Chain IDs:A (auth: E), B, C (auth: 0), E (auth: 8), F (auth: 6), G (auth: 4), H (auth: 2), I (auth: K), K (auth: I), L (auth: G), M (auth: W), N (auth: U), P (auth: S), Q, R (auth: O)
Chain Length:55
Number of Molecules:15
Biological Source:Roseiflexus castenholzii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Precursor for L subunits of photosynthetic reaction center
Gene (Uniprot):pufLM
Chain IDs:D (auth: L)
Chain Length:310
Number of Molecules:1
Biological Source:Roseiflexus castenholzii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Precursor for M subunits of photosynthetic reaction center
Gene (Uniprot):pufLM
Chain IDs:IA (auth: M)
Chain Length:306
Number of Molecules:1
Biological Source:Roseiflexus castenholzii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Alpha subunit of light-harvesting 1
Gene (Uniprot):pufA
Chain IDs:O (auth: T), S (auth: V), T (auth: R), U (auth: P), V (auth: N), W (auth: J), X (auth: H), Y (auth: F), Z (auth: D), AA (auth: A), BA (auth: 9), CA (auth: 7), DA (auth: 5), EA (auth: 3), FA (auth: 1)
Chain Length:42
Number of Molecules:15
Biological Source:Roseiflexus castenholzii
Polymer Type:polypeptide(L)
Molecule:Subunit X
Chain IDs:HA (auth: X)
Chain Length:23
Number of Molecules:1
Biological Source:Roseiflexus castenholzii
Polymer Type:polypeptide(L)
Molecule:Peptide from Precursor for L and M subunits of photosynthetic reaction center
Chain IDs:GA (auth: Y)
Chain Length:25
Number of Molecules:1
Biological Source:Roseiflexus castenholzii
Primary Citation
Cryo-EM structure of the RC-LH core complex from an early branching photosynthetic prokaryote.
Nat Commun 9 1568 1568 (2018)
PMID: 29674684 DOI: 10.1038/s41467-018-03881-x

Abstact

Photosynthetic prokaryotes evolved diverse light-harvesting (LH) antennas to absorb sunlight and transfer energy to reaction centers (RC). The filamentous anoxygenic phototrophs (FAPs) are important early branching photosynthetic bacteria in understanding the origin and evolution of photosynthesis. How their photosynthetic machinery assembles for efficient energy transfer is yet to be elucidated. Here, we report the 4.1 Å structure of photosynthetic core complex from Roseiflexus castenholzii by cryo-electron microscopy. The RC-LH complex has a tetra-heme cytochrome c bound RC encompassed by an elliptical LH ring that is assembled from 15 LHαβ subunits. An N-terminal transmembrane helix of cytochrome c inserts into the LH ring, not only yielding a tightly bound cytochrome c for rapid electron transfer, but also opening a slit in the LH ring, which is further flanked by a transmembrane helix from a newly discovered subunit X. These structural features suggest an unusual quinone exchange model of prokaryotic photosynthetic machinery.

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