5YPR image
Deposition Date 2017-11-02
Release Date 2018-03-14
Last Version Date 2024-10-30
Entry Detail
PDB ID:
5YPR
Keywords:
Title:
Crystal Structure of PSD-95 SH3-GK domain in complex with a synthesized inhibitor
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.35 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Disks large homolog 4
Gene (Uniprot):Dlg4
Chain IDs:A
Chain Length:318
Number of Molecules:1
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Molecule:Synthesized GK inhibitor
Chain IDs:B
Chain Length:16
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
Synaptic Targeting and Function of SAPAPs Mediated by Phosphorylation-Dependent Binding to PSD-95 MAGUKs.
Cell Rep 21 3781 3793 (2017)
PMID: 29281827 DOI: 10.1016/j.celrep.2017.11.107

Abstact

The PSD-95/SAPAP/Shank complex functions as the major scaffold in orchestrating the formation and plasticity of the post-synaptic densities (PSDs). We previously demonstrated that the exquisitely specific SAPAP/Shank interaction is critical for Shank synaptic targeting and Shank-mediated synaptogenesis. Here, we show that the PSD-95/SAPAP interaction, SAPAP synaptic targeting, and SAPAP-mediated synaptogenesis require phosphorylation of the N-terminal repeat sequences of SAPAPs. The atomic structure of the PSD-95 guanylate kinase (GK) in complex with a phosphor-SAPAP repeat peptide, together with biochemical studies, reveals the molecular mechanism underlying the phosphorylation-dependent PSD-95/SAPAP interaction, and it also provides an explanation of a PSD-95 mutation found in patients with intellectual disabilities. Guided by the structural data, we developed potent non-phosphorylated GK inhibitory peptides capable of blocking the PSD-95/SAPAP interaction and interfering with PSD-95/SAPAP-mediated synaptic maturation and strength. These peptides are genetically encodable for investigating the functions of the PSD-95/SAPAP interaction in vivo.

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