ISDA: 5YP5

Deposition Date 2017-11-01

Release Date 2018-04-04

Last Version Date 2024-03-27

Entry Detail

PDB ID:

5YP5

Keywords:

TRANSCRIPTION/INHIBITOR

Title:

Crystal structure of RORgamma complexed with SRC2 and compound 5d

Biological Source:

Source Organism(s):

Homo sapiens (Taxon ID: 9606)

Expression System(s):

Escherichia coli-thermus thermophilus shuttle vector ptrh1t

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.65 Å

R-Value Free:

0.25

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 41 21 2

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Nuclear receptor ROR-gamma
Gene (Uniprot):RORC
Chain IDs:A
Chain Length:243
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P51449 Pfam ID:PF00104

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:SRC2-2 peptide
Chain IDs:B
Chain Length:8
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q15596

Ligand Molecules

4CZ

Primary Citation

From ROR gamma t Agonist to Two Types of ROR gamma t Inverse Agonists

Wang, Y, Cai, W, Tang, T, Liu, Q, Yang, T, Yang, L, Ma, Y, Zhang, G, Huang, Y, Song, X, Orband-Miller, L.A, Wu, Q, Zhou, L, Xiang, Z, Xiang, J.N, Leung, S, Shao, L, Lin, X, Lobera, M, Ren, F.Show

ACS Med Chem Lett 9 120 124 (2018)

PMID: 29456799 DOI: 10.1021/acsmedchemlett.7b00476

Abstact

Biaryl amides as new RORgammat modulators were discovered. The crystal structure of biaryl amide agonist 6 in complex with RORgammat ligand binding domain (LBD) was resolved, and both "short" and "long" inverse agonists were obtained by removing from 6 or adding to 6 a proper structural moiety. While "short" inverse agonist (8) recruits a corepressor peptide and dispels a coactivator peptide, "long" inverse agonist (9) dispels both. The two types of inverse agonists can be utilized as potential tools to study mechanisms of Th17 transcriptional network inhibition and related disease biology.

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Primary Citation of related structures

Abstact

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