5YP5 image
Deposition Date 2017-11-01
Release Date 2018-04-04
Last Version Date 2024-03-27
Entry Detail
PDB ID:
5YP5
Title:
Crystal structure of RORgamma complexed with SRC2 and compound 5d
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.65 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear receptor ROR-gamma
Gene (Uniprot):RORC
Chain IDs:A
Chain Length:243
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SRC2-2 peptide
Chain IDs:B
Chain Length:8
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
From ROR gamma t Agonist to Two Types of ROR gamma t Inverse Agonists
ACS Med Chem Lett 9 120 124 (2018)
PMID: 29456799 DOI: 10.1021/acsmedchemlett.7b00476

Abstact

Biaryl amides as new RORgammat modulators were discovered. The crystal structure of biaryl amide agonist 6 in complex with RORgammat ligand binding domain (LBD) was resolved, and both "short" and "long" inverse agonists were obtained by removing from 6 or adding to 6 a proper structural moiety. While "short" inverse agonist (8) recruits a corepressor peptide and dispels a coactivator peptide, "long" inverse agonist (9) dispels both. The two types of inverse agonists can be utilized as potential tools to study mechanisms of Th17 transcriptional network inhibition and related disease biology.

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Chemical

Disease

Primary Citation of related structures
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