5YOQ image
Deposition Date 2017-10-30
Release Date 2018-02-07
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5YOQ
Title:
Human serum albumin complexed with sodium 4-phenylbutyrate
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.65 Å
R-Value Free:
0.25
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Serum albumin
Gene (Uniprot):ALB
Chain IDs:A, B
Chain Length:585
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Crystal structure analysis of human serum albumin complexed with sodium 4-phenylbutyrate.
Biochem Biophys Rep 13 78 82 (2018)
PMID: 29387812 DOI: 10.1016/j.bbrep.2018.01.006

Abstact

Sodium 4-phenylbutyrate (PB) is an orphan drug for the treatment of urea cycle disorders. It also inhibits the development of endoplasmic reticulum stress, the action of histone deacetylases and as a regulator of the hepatocanalicular transporter. PB is generally considered to have the potential for use in the treatment of the diseases such as cancer, neurodegenerative diseases and metabolic diseases. In a previous study, we reported that PB is primarily bound to human serum albumin (HSA) in plasma and its binding site is drug site 2. However, details of the binding mode of PB to HSA remain unknown. To address this issue, we examined the crystal structure of HSA with PB bound to it. The structure of the HSA-PB complex indicates that the binding mode of PB to HSA is quite similar to that for octanoate or drugs that bind to drug site 2, as opposed to that for other medium-chain length of fatty acids. These findings provide useful basic information related to drug-HSA interactions. Moreover, the information presented herein is valuable in terms of providing safe and efficient treatment and diagnosis in clinical settings.

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Primary Citation of related structures