5YOK image
Deposition Date 2017-10-29
Release Date 2018-07-18
Last Version Date 2024-03-27
Entry Detail
PDB ID:
5YOK
Title:
Structure of HIV-1 Protease in Complex with Inhibitor KNI-1657
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
0.85 Å
R-Value Free:
0.12
R-Value Work:
0.10
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HIV-1 PROTEASE
Chain IDs:A, B
Chain Length:100
Number of Molecules:2
Biological Source:Human immunodeficiency virus 1
Primary Citation
Identification of Highly Potent Human Immunodeficiency Virus Type-1 Protease Inhibitors against Lopinavir and Darunavir Resistant Viruses from Allophenylnorstatine-Based Peptidomimetics with P2 Tetrahydrofuranylglycine.
J. Med. Chem. 61 5138 5153 (2018)
PMID: 29852069 DOI: 10.1021/acs.jmedchem.7b01709

Abstact

The emergence of drug-resistant HIV from a widespread antiviral chemotherapy targeting HIV protease in the past decades is unavoidable and provides a challenge to develop alternative inhibitors. We synthesized a series of allophenylnorstatine-based peptidomimetics with various P3, P2, and P2́ moieties. The derivatives with P2 tetrahydrofuranylglycine (Thfg) were found to be potent against wild type HIV-1 protease and the virus, leading to a highly potent compound 21f (KNI-1657) against lopinavir/ritonavir- or darunavir-resistant strains. Co-crystal structures of 21f and the wild-type protease revealed numerous key hydrogen bonding interactions with Thfg. These results suggest that the strategy to design allophenylnorstatine-based peptidomimetics combined with Thfg residue would be promising for generating candidates to overcome multidrug resistance.

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Primary Citation of related structures
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