5YO8 image
Deposition Date 2017-10-27
Release Date 2018-05-09
Last Version Date 2024-03-27
Entry Detail
PDB ID:
5YO8
Keywords:
Title:
Crystal structure of beta-C25/C30/C35-prene synthase
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.64 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tetraprenyl-beta-curcumene synthase
Gene (Uniprot):AJ85_10400, BALCAV_0202405
Chain IDs:A, B
Chain Length:354
Number of Molecules:2
Biological Source:Bacillus alcalophilus ATCC 27647 = CGMCC 1.3604
Primary Citation
Crystal structure and functional analysis of large-terpene synthases belonging to a newly found subclass.
Chem Sci 9 3754 3758 (2018)
PMID: 29780507 DOI: 10.1039/c8sc00289d

Abstact

Thousands of terpenes have been identified to date. However, only two classes of enzymes are known to be involved in their biosynthesis, and each class has characteristic amino-acid motifs. We recently identified a novel large-terpene (C25/C30/C35) synthase, which shares no motifs with known enzymes. To elucidate the molecular mechanism of this enzyme, we determined the crystal structure of a large-β-prene synthase from B. alcalophilus (BalTS). Surprisingly, the overall structure of BalTS is similar to that of the α-domain of class I terpene synthases although their primary structures are totally different from each other. Two novel aspartate-rich motifs, DYLDNLxD and DY(F,L,W)IDxxED, are identified, and mutations of any one of the aspartates eliminate its enzymatic activity. The present work leads us to propose a new subclass of terpene synthases, class IB, which is probably responsible for large-terpene biosynthesis.

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