5YL7 image
Deposition Date 2017-10-17
Release Date 2018-01-31
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5YL7
Keywords:
Title:
Proteases from Pseudoalteromonas arctica PAMC 21717 (Pro21717)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.15
R-Value Work:
0.12
R-Value Observed:
0.13
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pseudoalteromonas arctica PAMC 21717
Chain IDs:A
Chain Length:347
Number of Molecules:1
Biological Source:Pseudoalteromonas arctica
Polymer Type:polypeptide(L)
Molecule:Copurified unknown peptide
Chain IDs:B
Chain Length:3
Number of Molecules:1
Biological Source:Pseudoalteromonas arctica
Ligand Molecules
Primary Citation
Crystal structure of a cold-active protease (Pro21717) from the psychrophilic bacterium, Pseudoalteromonas arctica PAMC 21717, at 1.4 angstrom resolution: Structural adaptations to cold and functional analysis of a laundry detergent enzyme
PLoS ONE 13 e0191740 e0191740 (2018)
PMID: 29466378 DOI: 10.1371/journal.pone.0191740

Abstact

Enzymes isolated from organisms found in cold habitats generally exhibit higher catalytic activity at low temperatures than their mesophilic homologs and are therefore known as cold-active enzymes. Cold-active proteases are very useful in a variety of biotechnological applications, particularly as active ingredients in laundry and dishwashing detergents, where they provide strong protein-degrading activity in cold water. We identified a cold-active protease (Pro21717) from a psychrophilic bacterium, Pseudoalteromonas arctica PAMC 21717, and determined the crystal structure of its catalytic domain (CD) at a resolution of 1.4 A. The Pro21717-CD structure shows a conserved subtilisin-like fold with a typical catalytic triad (Asp185, His244, and Ser425) and contains four calcium ions and three disulfide bonds. Interestingly, we observed an unexpected electron density at the substrate-binding site from a co-purified peptide. Although the sequence of this peptide is unknown, analysis of the peptide-complexed structure nonetheless provides some indication of the substrate recognition and binding mode of Pro21717. Moreover, various parameters, including a wide substrate pocket size, an abundant active-site loop content, and a flexible structure provide potential explanations for the cold-adapted properties of Pro21717. In conclusion, this is first structural characterization of a cold-adapted subtilisin-like protease, and these findings provide a structural and functional basis for industrial applications of Pro21717 as a cold-active laundry or dishwashing detergent enzyme.

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Primary Citation of related structures