5YKB image
Deposition Date 2017-10-13
Release Date 2017-10-25
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5YKB
Keywords:
Title:
The N253F mutant structure of trehalose synthase from Deinococcus radiodurans reveals an open active-site conformation
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.76 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Trehalose synthase
Mutations:R97W,N253F,T313I,I380V
Chain IDs:A, B, C, D
Chain Length:571
Number of Molecules:4
Biological Source:Deinococcus radiodurans str. R1
Primary Citation
The N253F mutant structure of trehalose synthase from Deinococcus radiodurans reveals an open active-site topology
Acta Crystallogr F Struct Biol Commun 73 588 594 (2017)
PMID: 29095151 DOI: 10.1107/S2053230X17014303

Abstact

Trehalose synthase (TS) catalyzes the reversible conversion of maltose to trehalose and belongs to glycoside hydrolase family 13 (GH13). Previous mechanistic analysis suggested a rate-limiting protein conformational change, which is probably the opening and closing of the active site. Consistently, crystal structures of Deinococcus radiodurans TS (DrTS) in complex with the inhibitor Tris displayed an enclosed active site for catalysis of the intramoleular isomerization. In this study, the apo structure of the DrTS N253F mutant displays a new open conformation with an empty active site. Analysis of these structures suggests that substrate binding induces a domain rotation to close the active site. Such a substrate-induced domain rotation has also been observed in some other GH13 enzymes.

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