5YJM image
Entry Detail
PDB ID:
5YJM
Keywords:
Title:
Human chymase in complex with 7-oxo-3-(phenoxyimino)-1,4-diazepane derivative
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-10-11
Release Date:
2017-12-27
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.18
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 43
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:human chymase
Chain IDs:A
Chain Length:226
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
NAG B NAG -D
Primary Citation
Structure-based design, synthesis, and binding mode analysis of novel and potent chymase inhibitors
Bioorg. Med. Chem. Lett. 28 188 192 (2018)
PMID: 29191554 DOI: 10.1016/j.bmcl.2017.11.031

Abstact

Based on insight from the X-ray crystal structure of human chymase in complex with compound 1, a lactam carbonyl of the diazepane core was exchanged with O-substituted oxyimino group, leading to amidoxime derivatives. This modification resulted in highly potent chymase inhibitors, such as O-phenylamidoxime 5f. X-ray crystal structure analysis indicated that compound 5f induced movement of the Leu99 and Tyr94 side chains at the S2 site, and the increase in inhibitory activity of O-phenyl amidoxime derivatives suggested that the O-phenyl moiety interacted with the Tyr94 residue. Surface plasmon resonance experiments showed that compound 5f had slower association and dissociation kinetics and the calculated residence time of compound 5f to human chymase was extended compared to that of amide compound 1.

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Primary Citation of related structures