5YHW image
Deposition Date 2017-09-30
Release Date 2018-10-17
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5YHW
Keywords:
Title:
Crystal structure of Pig SAMHD1
Biological Source:
Source Organism:
Sus scrofa (Taxon ID: 9823)
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.29
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Deoxynucleoside triphosphate triphosphohydrolase SAMHD1
Gene (Uniprot):SAMHD1
Mutations:H206R,D207N
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:524
Number of Molecules:8
Biological Source:Sus scrofa
Primary Citation
Structural characterization and directed modification of Sus scrofa SAMHD1 reveal the mechanism underlying deoxynucleotide regulation.
Febs J. 286 3844 3857 (2019)
PMID: 31152619 DOI: 10.1111/febs.14943

Abstact

Sterile α-motif/histidine-aspartate domain-containing protein 1 (SAMHD1) is an intrinsic antiviral restriction factor known to play a vital role in preventing multiple viral infections and in the control of the cellular deoxynucleoside triphosphate (dNTP) pool. Human and mouse SAMHD1 have both been extensively studied; however, our knowledge on porcine SAMHD1 is limited. Here, we report our findings from comprehensive structural and functional studies on porcine SAMHD1. We determined the crystal structure of porcine SAMHD1 and showed that it forms a symmetric tetramer. Moreover, we modified the deoxynucleotide triphosphohydrolase (dNTPase) activity of SAMHD1 by site-directed mutagenesis based on the crystal structure, and obtained an artificial dimeric enzyme possessing high dNTPase activity. Taken together, our results define the mechanism underlying dNTP regulation and provide a deeper understanding of the regulation of porcine SAMHD1 functions. Directed modification of key residues based on the protein structure enhances the activity of the enzyme, which will be beneficial in the search for new antiviral strategies and for future translational applications.

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