5YHN image
Entry Detail
PDB ID:
5YHN
Title:
Solution structure of the LEKTI Domain 4
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-09-29
Release Date:
2018-08-08
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:cDNA FLJ60407, highly similar to Serine protease inhibitor Kazal-type 5
Chain IDs:A
Chain Length:69
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Homologous Lympho-Epithelial Kazal-type Inhibitor Domains Delay Blood Coagulation by Inhibiting Factor X and XI with Differential Specificity.
Structure 26 1178 1186.e3 (2018)
PMID: 30017565 DOI: 10.1016/j.str.2018.05.018

Abstact

Despite being initially identified in the blood filtrate, LEKTI is a 15-domain Kazal-type inhibitor mostly known in the regulation of skin desquamation. In the current study, screening of serine proteases in blood coagulation cascade showed that LEKTI domain 4 has inhibitory activity toward only FXIa, whereas LEKTI domain 6 inhibits both FXIa and FXaB (bovine FXa). Nuclear magnetic resonance structural and dynamic experiments plus molecular dynamics simulation revealed that LEKTI domain 4 has enhanced backbone flexibility at the reactive-site loop. A model of the LEKTI-protease complex revealed that FXaB has a narrower S4 pocket compared with FXIa and hence prefers only small side-chain residues at the P4 position, such as Ala in LEKTI domain 6. Mutational studies combined with a molecular complex model suggest that both a more flexible reactive-site loop and a bulky residue at the P4 position make LEKTI domain 4 a weaker but highly selective inhibitor of FXIa.

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Primary Citation of related structures