5YH4 image
Entry Detail
PDB ID:
5YH4
Title:
Miraculin-like protein from Vitis vinifera
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-09-27
Release Date:
2018-10-03
Method Details:
Experimental Method:
Resolution:
1.30 Å
R-Value Free:
0.18
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:mirauclin-like protein
Mutations:S27A
Chain IDs:A
Chain Length:179
Number of Molecules:1
Biological Source:Vitis vinifera
Ligand Molecules
Primary Citation
Structural and functional analysis of miraculin-like protein from Vitis vinifera.
Biochim Biophys Acta Proteins Proteom 1866 1125 1130 (2018)
PMID: 30282610 DOI: 10.1016/j.bbapap.2018.08.009

Abstact

The so-called miraculin-like proteins (MLPs) are homologous to miraculin, a homodimeric protein with taste-modifying activity that converts sourness into sweetness. The identity between MLPs and miraculin generally ranges from 30% to 55%, and both MLPs and miraculin are categorized into the Kunitz-type soybean trypsin inhibitor (STI) family. MLP from grape (Vitis vinifera; vvMLP) exhibits significant homology to miraculin (61% identity), suggesting that vvMLP possesses miraculin-like properties. The results of size-exclusion chromatography and sensory analysis illustrated that vvMLP exists as a monomer in solution with no detectable taste-modifying activity. Crystal structure determination revealed that vvMLP exists as a β-trefoil fold, similarly as other MLPs and Kunitz-type protein inhibitors. The conformation of the loops, including the so-called reactive loop in the STI family, was substantially different between vvMLP and STI. Recombinant vvMLP had inhibitory activity against trypsin (Ki = 13.7 μM), indicating that the protein can act as a moderate trypsin inhibitor.

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Primary Citation of related structures