5YDA image
Deposition Date 2017-09-12
Release Date 2018-05-23
Last Version Date 2024-03-27
Entry Detail
PDB ID:
5YDA
Title:
The crystal structure of the Acyl Transferase domain of SpnD
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.35 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 43 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PKS
Gene (Uniprot):spnD
Chain IDs:A
Chain Length:433
Number of Molecules:1
Biological Source:Streptomyces sp. CNQ431
Primary Citation
Structural Basis of a Broadly Selective Acyltransferase from the Polyketide Synthase of Splenocin.
Angew. Chem. Int. Ed. Engl. 57 5823 5827 (2018)
PMID: 29536601 DOI: 10.1002/anie.201802805

Abstact

Polyketides are a large family of pharmaceutically important natural products, and the structural modification of their scaffolds is significant for drug development. Herein, we report high-resolution X-ray crystal structures of the broadly selective acyltransferase (AT) from the splenocin polyketide synthase (SpnD-AT) in the apo form and in complex with benzylmalonyl and pentynylmalonyl extender unit mimics. These structures revealed the molecular basis for the stereoselectivity and substrate specificity of SpnD-AT, and enabled the engineering of the industrially important Ery-AT6 to broaden its substrate scope to include three new types of extender units.

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