5YCJ image
Entry Detail
PDB ID:
5YCJ
Keywords:
Title:
Ancestral myoglobin aMbWb' of Basilosaurus relative (polyphyly) imidazole-ligand
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-09-07
Release Date:
2018-09-19
Method Details:
Experimental Method:
Resolution:
1.58 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ancestral myoglobin aMbWb' of Basilosaurus relative (polyphyly)
Chain IDs:A, B
Chain Length:157
Number of Molecules:2
Biological Source:Physeter catodon
Primary Citation
Tracing whale myoglobin evolution by resurrecting ancient proteins.
Sci Rep 8 16883 16883 (2018)
PMID: 30442991 DOI: 10.1038/s41598-018-34984-6

Abstact

Extant cetaceans, such as sperm whale, acquired the great ability to dive into the ocean depths during the evolution from their terrestrial ancestor that lived about 50 million years ago. Myoglobin (Mb) is highly concentrated in the myocytes of diving animals, in comparison with those of land animals, and is thought to play a crucial role in their adaptation as the molecular aqualung. Here, we resurrected ancestral whale Mbs, which are from the common ancestor between toothed and baleen whales (Basilosaurus), and from a further common quadrupedal ancestor between whale and hippopotamus (Pakicetus). The experimental and theoretical analyses demonstrated that whale Mb adopted two distinguished strategies to increase the protein concentration in vivo along the evolutionary history of deep sea adaptation; gaining precipitant tolerance in the early phase of the evolution, and increase of folding stability in the late phase.

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