5YC8 image
Entry Detail
PDB ID:
5YC8
Title:
Crystal structure of rationally thermostabilized M2 muscarinic acetylcholine receptor bound with NMS (Hg-derivative)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-09-06
Release Date:
2018-11-21
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Muscarinic acetylcholine receptor M2,Redesigned apo-cytochrome b562,Muscarinic acetylcholine receptor M2
Mutations:S110R
Chain IDs:A
Chain Length:421
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structural insights into the subtype-selective antagonist binding to the M2muscarinic receptor
Nat. Chem. Biol. 14 1150 1158 (2018)
PMID: 30420692 DOI: 10.1038/s41589-018-0152-y

Abstact

Human muscarinic receptor M2 is one of the five subtypes of muscarinic receptors belonging to the family of G-protein-coupled receptors. Muscarinic receptors are targets for multiple neurodegenerative diseases. The challenge has been designing subtype-selective ligands against one of the five muscarinic receptors. We report high-resolution structures of a thermostabilized mutant M2 receptor bound to a subtype-selective antagonist AF-DX 384 and a nonselective antagonist NMS. The thermostabilizing mutation S110R in M2 was predicted using a theoretical strategy previously developed in our group. Comparison of the crystal structures and pharmacological properties of the M2 receptor shows that the Arg in the S110R mutant mimics the stabilizing role of the sodium cation, which is known to allosterically stabilize inactive state(s) of class A GPCRs. Molecular dynamics simulations reveal that tightening of the ligand-residue contacts in M2 receptors compared to M3 receptors leads to subtype selectivity of AF-DX 384.

Legend

Protein

Chemical

Disease

Primary Citation of related structures