5YB0 image
Entry Detail
PDB ID:
5YB0
Keywords:
Title:
Crystal Structure of Wild Type Phosphoserine aminotransferase (PSAT) from E. histolytica
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-09-02
Release Date:
2018-10-31
Method Details:
Experimental Method:
Resolution:
2.94 Å
R-Value Free:
0.30
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Phosphoserine aminotransferase
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:358
Number of Molecules:12
Biological Source:Entamoeba histolytica
Primary Citation
N-terminal residues are crucial for quaternary structure and active site conformation for the phosphoserine aminotransferase from enteric human parasite E. histolytica.
Int.J.Biol.Macromol. 132 1012 1023 (2019)
PMID: 30959130 DOI: 10.1016/j.ijbiomac.2019.04.027

Abstact

Phosphoserine aminotransferase (PSAT) is a pyridoxal-5'phosphate (PLP)-dependent enzyme that catalyzes the second reversible step in the phosphoserine biosynthetic pathway producing serine. The crystal structure of E. histolytica PSAT (EhPSAT) complexed with PLP was elucidated at 3.0 Å resolution and the structures of its mutants, EhPSAT_Δ45 and EhPSAT_Δ4, at 1.8 and 2.4 Å resolution respectively. Deletion of 45 N-terminal residues (EhPSAT_Δ45) resulted in an inactive protein, the structure showed a dimeric arrangement drastically different from that of the wild-type protein, with the two monomers translated and rotated by almost 180° with respect to each other; causing a rearrangement of the active site to which PLP was unable to bind. Deletion of first N-terminal 15 (EhPSAT_Δ15) and four 11th to 14th residues (EhPSAT_Δ4) yielded up to 98% and 90% decrease in the activity respectively. Absence of aldimine linkage between PLP-Lys in the crystal structure of EhPSAT_Δ4 mutant explains for such decrease in activity and describes the importance of these N-terminal residues. Furthermore, a halide-binding site was found in close proximity to the active site. A stretch of six amino acids (146-NNTIYG-151) only conserved in the Entamoeba genus, contributes to halide binding may explain that the halide inhibition could be specific to Entamoeba.

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