5YAN image
Deposition Date 2017-09-01
Release Date 2018-06-13
Last Version Date 2025-04-09
Entry Detail
PDB ID:
5YAN
Title:
Deconstructing the Salt-Bridge Network of a Computationally Designed Collagen Heterotrimer
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.77 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Collagen
Chain IDs:A, D
Chain Length:32
Number of Molecules:2
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Molecule:Collagen
Chain IDs:B, E
Chain Length:32
Number of Molecules:2
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Molecule:Collagen
Chain IDs:C, F
Chain Length:32
Number of Molecules:2
Biological Source:synthetic construct
Primary Citation
How electrostatic networks modulate specificity and stability of collagen.
Proc. Natl. Acad. Sci. U.S.A. 115 6207 6212 (2018)
PMID: 29844169 DOI: 10.1073/pnas.1802171115

Abstact

One-quarter of the 28 types of natural collagen exist as heterotrimers. The oligomerization state of collagen affects the structure and mechanics of the extracellular matrix, providing essential cues to modulate biological and pathological processes. A lack of high-resolution structural information limits our mechanistic understanding of collagen heterospecific self-assembly. Here, the 1.77-Å resolution structure of a synthetic heterotrimer demonstrates the balance of intermolecular electrostatics and hydrogen bonding that affects collagen stability and heterospecificity of assembly. Atomistic simulations and mutagenesis based on the solved structure are used to explore the contributions of specific interactions to energetics. A predictive model of collagen stability and specificity is developed for engineering novel collagen structures.

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Primary Citation of related structures