5YA6 image
Deposition Date 2017-08-30
Release Date 2019-02-06
Last Version Date 2024-03-27
Entry Detail
PDB ID:
5YA6
Title:
Crystal structure of archaeal flagellin FlaB1 from Methanocaldococcus jannaschii
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Flagellin B1
Gene (Uniprot):flaB1
Chain IDs:A, B
Chain Length:174
Number of Molecules:2
Biological Source:Methanocaldococcus jannaschii DSM 2661
Ligand Molecules
Primary Citation
High-resolution archaellum structure reveals a conserved metal-binding site.
Embo Rep. 20 ? ? (2019)
PMID: 30898768 DOI: 10.15252/embr.201846340

Abstact

Many archaea swim by means of archaella. While the archaellum is similar in function to its bacterial counterpart, its structure, composition, and evolution are fundamentally different. Archaella are related to archaeal and bacterial type IV pili. Despite recent advances, our understanding of molecular processes governing archaellum assembly and stability is still incomplete. Here, we determine the structures of Methanococcus archaella by X-ray crystallography and cryo-EM The crystal structure of Methanocaldococcus jannaschii FlaB1 is the first and only crystal structure of any archaellin to date at a resolution of 1.5 Å, which is put into biological context by a cryo-EM reconstruction from Methanococcus maripaludis archaella at 4 Å resolution created with helical single-particle analysis. Our results indicate that the archaellum is predominantly composed of FlaB1. We identify N-linked glycosylation by cryo-EM and mass spectrometry. The crystal structure reveals a highly conserved metal-binding site, which is validated by mass spectrometry and electron energy-loss spectroscopy. We show in vitro that the metal-binding site, which appears to be a widespread property of archaellin, is required for filament integrity.

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Primary Citation of related structures