ISDA: 5Y9Y

Deposition Date 2017-08-29

Release Date 2018-10-31

Last Version Date 2024-03-27

Entry Detail

PDB ID:

5Y9Y

Keywords:

BIOSYNTHETIC PROTEIN

Title:

Crystal structure of the Kdo hydroxylase KdoO, a non-heme Fe(II) alphaketoglutarate dependent dioxygenase in complex with succinate and Co(II)

Biological Source:

Source Organism:

Methylacidiphilum infernorum (Taxon ID: 481448)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.60 Å

R-Value Free:

0.19

R-Value Work:

0.15

R-Value Observed:

0.16

Space Group:

P 21 21 21

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Uncharacterized protein KdoO
Gene (Uniprot):Minf_1012
Chain IDs:A
Chain Length:318
Number of Molecules:1
Biological Source:Methylacidiphilum infernorum

UniProt ID:B3DUR4 Pfam ID:PF11004

Ligand Molecules

ACT

GOL

PG4

SIN

SO4

Primary Citation

Biochemical and structural insights of Fe(II)/alpha-ketoglutarate/O2-dependent dioxygenase, KdoO from Methylacidiphilum infernorum V4

Chung, H.S, Pemble IV, C.W, Joo, S.H.Show

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Primary Citation of related structures