5Y9X image
Deposition Date 2017-08-29
Release Date 2018-10-31
Last Version Date 2024-03-27
Entry Detail
PDB ID:
5Y9X
Keywords:
BIOSYNTHETIC PROTEIN
Title:
Crystal structure of the Kdo hydroxylase KdoO, a non-heme Fe(II) alphaketoglutarate dependent dioxygenase in complex with alphaketoglutarate and coblat(II)
Biological Source:
Source Organism:
Methylacidiphilum infernorum (isolate V4) (Taxon ID: 481448)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.39 Å
R-Value Free:
0.16
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
P 21 21 21
5Y9X validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Uncharacterized protein KdoO
Gene (Uniprot):Minf_1012
Chain IDs:A
Chain Length:318
Number of Molecules:1
Biological Source:Methylacidiphilum infernorum (isolate V4)
UniProt ID:B3DUR4 Pfam ID:PF11004
Ligand Molecules
ACT
AKG
CL
CO
GOL
PG4
SO4
Primary Citation
Biochemical and structural insights of Fe(II)/alpha-ketoglutarate/O2-dependent dioxygenase, KdoO from Methylacidiphilum infernorum V4
To Be Published ? ? ? (?)
Primary Citation of related structures
5Y9X