ISDA: 5Y9L

Deposition Date 2017-08-25

Release Date 2017-11-29

Last Version Date 2024-10-16

Entry Detail

PDB ID:

5Y9L

Keywords:

HYDROLASE

Title:

Human kallikrein 7 in complex with 1,3,6-trisubstituted 1,4-diazepane-7-one

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.15 Å

R-Value Free:

0.27

R-Value Work:

0.20

R-Value Observed:

0.21

Space Group:

I 2 2 2

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Kallikrein-7
Gene (Uniprot):KLK7
Chain IDs:A
Chain Length:224
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P49862 Pfam ID:PF00089 EC:3.4.21.117

Ligand Molecules

8R3

Primary Citation

Discovery and structure-activity relationship study of 1,3,6-trisubstituted 1,4-diazepane-7-ones as novel human kallikrein 7 inhibitors

Murafuji, H, Sakai, H, Goto, M, Imajo, S, Sugawara, H, Muto, T.Show

Bioorg. Med. Chem. Lett. 27 5272 5276 (2017)

PMID: 29102227 DOI: 10.1016/j.bmcl.2017.10.030

Abstact

Compound 1, composed of a 1,3,6-trisubstituted 1,4-diazepane-7-one, was discovered as a novel human kallikrein 7 (KLK7, stratum corneum chymotryptic enzyme, SCCE) inhibitor, and its derivatives were synthesized and evaluated. Structure-activity relationship studies of the amidoxime unit and benzoic acid part of this new scaffold led to the identification of 25 and 34, which were more potent than the hit compound, 1. The X-ray co-crystal structure of compound 25 and human KLK7 revealed the characteristic interactions and enabled explanations of the structure-activity relationship.

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