5Y6L image
Deposition Date 2017-08-12
Release Date 2018-08-15
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5Y6L
Keywords:
LIGASE
Title:
A subcomplex crystal structure of human cytosolic aspartyl-tRNA synthetase and heterotetrameric glutathione transferase-homology domains in multi-tRNA synthetase complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.90 Å
R-Value Free:
0.25
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 21 21 21
5Y6L validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Methionine--tRNA ligase, cytoplasmic
Gene (Uniprot):MARS1
Mutations:S171R
Chain IDs:A
Chain Length:232
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P56192 Pfam ID:PF18485, PF00043 EC:6.1.1.10
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Eukaryotic translation elongation factor 1 epsilon-1
Gene (Uniprot):EEF1E1
Mutations:C147S
Chain IDs:B
Chain Length:186
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:O43324 Pfam ID:PF21972
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Bifunctional glutamate/proline--tRNA ligase
Gene (Uniprot):EPRS1
Mutations:C92S, C105S, C123S
Chain IDs:C
Chain Length:175
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P07814 Pfam ID:PF21972 EC:6.1.1.15
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Aminoacyl tRNA synthase complex-interacting multifunctional protein 2
Gene (Uniprot):AIMP2
Chain IDs:D
Chain Length:240
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q13155 Pfam ID:PF18569, PF00043
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Aspartate--tRNA ligase, cytoplasmic
Gene (Uniprot):DARS1
Chain IDs:E
Chain Length:521
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P14868 Pfam ID:PF01336, PF00152 EC:6.1.1.12
Ligand Molecules
PO4
Primary Citation
A subcomplex crystal structure of human cytosolic aspartyl-tRNA synthetase and heterotetrameric glutathione transferase-homology domains in multi-tRNA synthetase complex
To be published ? ? ? (?)
Primary Citation of related structures
5Y6L