5Y6K image
Deposition Date 2017-08-12
Release Date 2018-01-24
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5Y6K
Keywords:
Title:
Human serum trnasferrin bound to a fluorescent probe
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.86 Å
R-Value Free:
0.23
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Serotransferrin
Gene (Uniprot):TF
Chain IDs:A
Chain Length:679
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Tracking iron-associated proteomes in pathogens by a fluorescence approach.
Metallomics 10 77 82 (2018)
PMID: 29323384 DOI: 10.1039/c7mt00275k

Abstact

Porphyromonas gingivalis is a key oral anaerobic bacterium involved in human periodontitis, which may affect up to 15% adults worldwide. Using the membrane permeable fluorescent probe Fe-TRACER, we identified 17 iron-associated proteins in Porphyromonas gingivalis. We demonstrated the specific binding of the probe towards iron-associated proteins using transferrin as an example and provided an X-ray structure of the fluorescent probe-bound transferrin. Our study provides a basis for the understanding of iron homeostasis in pathogens, and our approach based on the integration of fluorescence imaging with proteomics and bioinformatics can be readily extended to mine other metalloproteomes in microbials.

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Primary Citation of related structures