5Y5S image
Entry Detail
PDB ID:
5Y5S
Keywords:
Title:
Structure of photosynthetic LH1-RC super-complex at 1.9 angstrom resolution
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2017-08-09
Release Date:
2018-04-11
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:LH1 alpha polypeptide
Chain IDs:E (auth: A), G (auth: D), I (auth: F), K (auth: I), M (auth: K), O, Q, S, U, W, Y, AA (auth: 1), CA (auth: 3), EA (auth: 5), GA (auth: 7), IA (auth: 9)
Chain Length:61
Number of Molecules:16
Biological Source:Thermochromatium tepidum
Polymer Type:polypeptide(L)
Description:LH1 beta polypeptide
Chain IDs:F (auth: B), H (auth: E), J (auth: G), L (auth: J), N, P, R, T, V, X, Z, BA (auth: 2), DA (auth: 4), FA (auth: 6), HA (auth: 8), JA (auth: 0)
Chain Length:47
Number of Molecules:16
Biological Source:Thermochromatium tepidum
Polymer Type:polypeptide(L)
Description:Photosynthetic reaction center cytochrome c subunit
Chain IDs:A (auth: C)
Chain Length:404
Number of Molecules:1
Biological Source:Thermochromatium tepidum
Polymer Type:polypeptide(L)
Description:Photosynthetic reaction center H subunit
Chain IDs:D (auth: H)
Chain Length:259
Number of Molecules:1
Biological Source:Thermochromatium tepidum
Polymer Type:polypeptide(L)
Description:Photosynthetic reaction center L subunit
Chain IDs:B (auth: L)
Chain Length:281
Number of Molecules:1
Biological Source:Thermochromatium tepidum
Polymer Type:polypeptide(L)
Description:Photosynthetic reaction center M subunit
Chain IDs:C (auth: M)
Chain Length:325
Number of Molecules:1
Biological Source:Thermochromatium tepidum
Primary Citation
Structure of photosynthetic LH1-RC supercomplex at 1.9 angstrom resolution.
Nature 556 209 213 (2018)
PMID: 29618814 DOI: 10.1038/s41586-018-0002-9

Abstact

Light-harvesting complex 1 (LH1) and the reaction centre (RC) form a membrane-protein supercomplex that performs the primary reactions of photosynthesis in purple photosynthetic bacteria. The structure of the LH1-RC complex can provide information on the arrangement of protein subunits and cofactors; however, so far it has been resolved only at a relatively low resolution. Here we report the crystal structure of the calcium-ion-bound LH1-RC supercomplex of Thermochromatium tepidum at a resolution of 1.9 Å. This atomic-resolution structure revealed several new features about the organization of protein subunits and cofactors. We describe the loop regions of RC in their intact states, the interaction of these loop regions with the LH1 subunits, the exchange route for the bound quinone QB with free quinone molecules, the transport of free quinones between the inside and outside of the LH1 ring structure, and the detailed calcium-ion-binding environment. This structure provides a solid basis for the detailed examination of the light reactions that occur during bacterial photosynthesis.

Legend

Protein

Chemical

Disease

Primary Citation of related structures