5Y3D image
Deposition Date 2017-07-28
Release Date 2018-07-18
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5Y3D
Keywords:
Title:
Structural insight into the interaction between RNA polymerase and VPg for norovirus replication
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.14 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:RNA-dependent RNA polymerase
Gene (Uniprot):ORF1
Chain IDs:A, B, C, D, E, F
Chain Length:517
Number of Molecules:6
Biological Source:Murine norovirus 1
Polymer Type:polypeptide(L)
Molecule:viral protein genome-linked (VPg)
Chain IDs:G, H
Chain Length:35
Number of Molecules:2
Biological Source:Murine norovirus
Primary Citation
Insight Into the Interaction Between RNA Polymerase and VPg for Murine Norovirus Replication.
Front Microbiol 9 1466 1466 (2018)
PMID: 30038601 DOI: 10.3389/fmicb.2018.01466

Abstact

Norovirus (NoV) is a leading cause of epidemic acute non-bacterial gastroenteritis, and replicates through virion protein genome-linked (VPg)-primed or de novo RNA synthesis by RNA-dependent RNA polymerase (RdRp). VPg is a multifunctional protein that plays crucial roles in viral protein translation and genome replication. However, the interaction between the RdRp and this multifunctional VPg in NoV replication has been unknown. In this study, VPg derived from murine NoV (MNV) was found to mediate the formation of higher-order multimers or tubular fibrils of MNV RdRp, which led to significantly enhanced polymerase activity in vitro. The replication of MNV mutants containing a VPg-binding defective RdRp, based on the crystal structure of an RdRp-VPg(1-73) complex, was completely blocked in a cell culture system. Our data suggest that the interaction between RdRp and VPg plays a crucial role in the multimerization-mediated RdRp activity in vivo and consequently in MNV replication, which can provide a new target of therapeutic intervention for NoV outbreaks.

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Primary Citation of related structures