5Y37 image
Deposition Date 2017-07-28
Release Date 2018-04-18
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5Y37
Keywords:
Title:
Crystal structure of GBS GAPDH
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.36 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glyceraldehyde-3-phosphate dehydrogenase
Gene (Uniprot):gbs1811
Chain IDs:A, B, C, D
Chain Length:344
Number of Molecules:4
Biological Source:Streptococcus agalactiae serotype III (strain NEM316)
Primary Citation
High-resolution crystal structure of Streptococcus agalactiae glyceraldehyde-3-phosphate dehydrogenase.
Acta Crystallogr.,Sect.F 74 236 244 (2018)
PMID: 29633972 DOI: 10.1107/S2053230X18003801

Abstact

Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) is a multifunctional enzyme that plays critical roles in bacterial pathogenesis in some pathogenic bacteria. In this study, the crystal structure of group B streptococcus GAPDH was determined at 1.36 Å resolution. The structure contained an asymmetric mixed holo tetramer, with two NAD ligands bound to two protomers. Further structural analysis identified interesting phosphate ion-binding sites, which shed light on its catalytic mechanism.

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