5Y2M image
Deposition Date 2017-07-26
Release Date 2019-02-13
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5Y2M
Keywords:
IMMUNE SYSTEM
Title:
Crystal structure of a group 2 HA binding antibody AF4H1K1 Fab in complex with the H4N6 duck isolate (H4-CZ/56) hemagglutinin
Biological Source:
Source Organism:
Influenza A virus (strain A/Duck/Czechoslovakia/1956 H4N6) (Taxon ID: 385590)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Trichoplusia ni
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
3.80 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
5Y2M validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin
Gene (Uniprot):HA
Chain IDs:A, C (auth: B), E (auth: C)
Chain Length:327
Number of Molecules:3
Biological Source:Influenza A virus (strain A/Duck/Czechoslovakia/1956 H4N6)
UniProt ID:A3KF09 Pfam ID:PF00509
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin
Gene (Uniprot):HA
Chain IDs:B (auth: D), D (auth: E), F
Chain Length:176
Number of Molecules:3
Biological Source:Influenza A virus (strain A/Duck/Czechoslovakia/1956 H4N6)
UniProt ID:A3KF09 Pfam ID:PF00509
Polymer Type:polypeptide(L)
Molecule:a group 2 HA binding antibody AF4H1K1 Fab heavy chain
Chain IDs:G (auth: I), I (auth: K)
Chain Length:233
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:a group 2 HA binding antibody AF4H1K1 Fab light chain
Chain IDs:H (auth: J), J (auth: L)
Chain Length:220
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
NAG
Primary Citation
An H3-clade neutralizing antibody screened from an H7N9 patient that binds group 2 influenza A hemagglutinins
To Be Published ? ? ? (?)
Primary Citation of related structures
5Y2M