5Y2J image
Deposition Date 2017-07-26
Release Date 2018-03-14
Last Version Date 2024-03-27
Entry Detail
PDB ID:
5Y2J
Keywords:
Title:
Crystal structure of the oligomerization domain of NSP4 from rotavirus strain MF66
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.55 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nonstructural protein 4
Chain IDs:A, B, C, D
Chain Length:53
Number of Molecules:4
Biological Source:Bovine rotavirus G10
Primary Citation
New tetrameric forms of the rotavirus NSP4 with antiparallel helices.
Arch. Virol. 163 1531 1547 (2018)
PMID: 29455326 DOI: 10.1007/s00705-018-3753-6

Abstact

Rotavirus nonstructural protein 4, the first viral enterotoxin to be identified, is a multidomain, multifunctional glycoprotein. Earlier, we reported a Ca(2+)-bound coiled-coil tetrameric structure of the diarrhea-inducing region of NSP4 from the rotavirus strains SA11 and I321 and a Ca(2+)-free pentameric structure from the rotavirus strain ST3, all with a parallel arrangement of alpha-helices. pH was found to determine the oligomeric state: a basic pH favoured a tetramer, whereas an acidic pH favoured a pentamer. Here, we report two novel forms of the coiled-coil region of NSP4 from the bovine rotavirus strains MF66 and NCDV. These crystallized at acidic pH, forming antiparallel coiled-coil tetrameric structures without any bound Ca(2+) ion. Structural and mutational studies of the coiled-coil regions of NSP4 revealed that the nature of the residue at position 131 (Tyr/His) plays an important role in the observed structural diversity.

Legend

Protein

Chemical

Disease

Primary Citation of related structures