5Y2F image
Deposition Date 2017-07-25
Release Date 2018-11-07
Last Version Date 2025-09-17
Entry Detail
PDB ID:
5Y2F
Title:
Human SIRT6 in complex with allosteric activator MDL-801
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.53 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 41 3 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD-dependent protein deacetylase sirtuin-6
Gene (Uniprot):SIRT6
Chain IDs:A
Chain Length:316
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:9-mer peptide QTARKSTGG
Chain IDs:B (auth: C)
Chain Length:9
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Identification of a cellularly active SIRT6 allosteric activator.
Nat. Chem. Biol. 14 1118 1126 (2018)
PMID: 30374165 DOI: 10.1038/s41589-018-0150-0

Abstact

SIRT6, a member of the SIRT deacetylase family, is responsible for deacetylation of histone H3 Nε-acetyl-lysines 9 (H3K9ac) and 56 (H3K56ac). As a tumor suppressor, SIRT6 has frequently been found to have low expression in various cancers. Here, we report the identification of MDL-800, a selective SIRT6 activator. MDL-800 increased the deacetylase activity of SIRT6 by up to 22-fold via binding to an allosteric site; this interaction led to a global decrease in H3K9ac and H3K56ac levels in human hepatocellular carcinoma (HCC) cells. Consequently, MDL-800 inhibited the proliferation of HCC cells via SIRT6-driven cell-cycle arrest and was effective in a tumor xenograft model. Together, these data demonstrate that pharmacological activation of SIRT6 is a potential therapeutic approach for the treatment of HCC. MDL-800 is a first-in-class small-molecule cellular SIRT6 activator that can be used to physiologically and pathologically investigate the roles of SIRT6 deacetylation.

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Primary Citation of related structures
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