5Y17 image
Entry Detail
PDB ID:
5Y17
Keywords:
Title:
CATPO mutant - E316F
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-07-19
Release Date:
2018-07-25
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
I 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Catalase
Mutations:E316F
Chain IDs:A, B, C, D
Chain Length:678
Number of Molecules:4
Biological Source:Mycothermus thermophilus
Primary Citation
Identification of the site of oxidase substrate binding in Scytalidium thermophilum catalase.
Acta Crystallogr D Struct Biol 74 979 985 (2018)
PMID: 30289408 DOI: 10.1107/S2059798318010628

Abstact

The catalase from Scytalidium thermophilum is a homotetramer containing a heme d in each active site. Although the enzyme has a classical monofunctional catalase fold, it also possesses oxidase activity towards a number of small organics, including catechol and phenol. In order to further investigate this, the crystal structure of the complex of the catalase with the classical catalase inhibitor 3-amino-1,2,4-triazole (3TR) was determined at 1.95 Å resolution. Surprisingly, no binding to the heme site was observed; instead, 3TR occupies a binding site corresponding to the NADPH-binding pocket in mammalian catalases at the entrance to a lateral channel leading to the heme. Kinetic analysis of site-directed mutants supports the assignment of this pocket as the binding site for oxidase substrates.

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Primary Citation of related structures