5Y0A image
Deposition Date 2017-07-15
Release Date 2017-10-04
Last Version Date 2024-03-27
Entry Detail
PDB ID:
5Y0A
Title:
Cryo-EM structure of zika virus complexed with Fab of ZKA190 at pH 8.0 and 37 celsius degree
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
22.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:protein E
Chain IDs:A, B (auth: C), C (auth: B)
Chain Length:403
Number of Molecules:3
Biological Source:Zika virus (strain Mr 766)
Polymer Type:polypeptide(L)
Molecule:variable region of Fab ZKA190 heavy chain
Chain IDs:D (auth: H), F, H (auth: D)
Chain Length:129
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:variable region of Fab ZKA190 light chain
Chain IDs:E (auth: L), G, I (auth: E)
Chain Length:108
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation

Abstact

Zika virus (ZIKV), a mosquito-borne flavivirus, causes devastating congenital birth defects. We isolated a human monoclonal antibody (mAb), ZKA190, that potently cross-neutralizes multi-lineage ZIKV strains. ZKA190 is highly effective in vivo in preventing morbidity and mortality of ZIKV-infected mice. NMR and cryo-electron microscopy show its binding to an exposed epitope on DIII of the E protein. ZKA190 Fab binds all 180 E protein copies, altering the virus quaternary arrangement and surface curvature. However, ZIKV escape mutants emerged in vitro and in vivo in the presence of ZKA190, as well as of other neutralizing mAbs. To counter this problem, we developed a bispecific antibody (FIT-1) comprising ZKA190 and a second mAb specific for DII of E protein. In addition to retaining high in vitro and in vivo potencies, FIT-1 robustly prevented viral escape, warranting its development as a ZIKV immunotherapy.

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Protein

Chemical

Disease

Primary Citation of related structures