5Y06 image
Deposition Date 2017-07-14
Release Date 2018-05-02
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5Y06
Title:
Structural characterization of msmeg_4306 from Mycobacterium smegmatis
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.61 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:msmeg_4306
Gene (Uniprot):MSMEG_4306
Chain IDs:A
Chain Length:262
Number of Molecules:1
Biological Source:Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Primary Citation
Crystal structure of the MSMEG_4306 gene product from Mycobacterium smegmatis
Acta Crystallogr F Struct Biol Commun 74 166 173 (2018)
PMID: 29497021 DOI: 10.1107/S2053230X18002236

Abstact

The MSMEG_4306 gene from Mycobacterium smegmatis encodes a protein of unknown function with 242 amino-acid residues that contains a conserved zinc-ribbon domain at its C-terminus. Here, the crystal structure of MSMEG_4306 determined by the single-wavelength anomalous dispersion method using just one zinc ion co-purified with the protein is reported. The crystal structure of MSMEG_4306 shows a coiled-coil helix domain in the N-terminal region and a zinc-ribbon domain in the C-terminal region. A structural similarity search against the Protein Data Bank using MSMEG_4306 as a query revealed two similar structures, namely CT398 from Chlamydia trachomatis and HP0958 from Helicobacter pylori, although they share only ∼15% sequence identity with MSMEG_4306. Based on comparative analysis, it is predicted that MSMEG_4306 may be involved in secretion systems, possibly by interacting with multiple proteins or nucleic acids.

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Primary Citation of related structures