5XY4 image
Deposition Date 2017-07-06
Release Date 2018-07-18
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5XY4
Keywords:
Title:
CATPO mutant - V536W
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.19
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
I 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Catalase
Mutagens:V536W
Chain IDs:A, B, C, D
Chain Length:678
Number of Molecules:4
Biological Source:Mycothermus thermophilus
Primary Citation
Identification of the site of oxidase substrate binding in Scytalidium thermophilum catalase.
Acta Crystallogr D Struct Biol 74 979 985 (2018)
PMID: 30289408 DOI: 10.1107/S2059798318010628

Abstact

The catalase from Scytalidium thermophilum is a homotetramer containing a heme d in each active site. Although the enzyme has a classical monofunctional catalase fold, it also possesses oxidase activity towards a number of small organics, including catechol and phenol. In order to further investigate this, the crystal structure of the complex of the catalase with the classical catalase inhibitor 3-amino-1,2,4-triazole (3TR) was determined at 1.95 Å resolution. Surprisingly, no binding to the heme site was observed; instead, 3TR occupies a binding site corresponding to the NADPH-binding pocket in mammalian catalases at the entrance to a lateral channel leading to the heme. Kinetic analysis of site-directed mutants supports the assignment of this pocket as the binding site for oxidase substrates.

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Primary Citation of related structures