5XQM image
Entry Detail
PDB ID:
5XQM
Title:
NMR solution structure of SMO1, Sumo homologue in Caenorhabditis elegans
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-06-07
Release Date:
2017-11-08
Method Details:
Experimental Method:
Conformers Calculated:
400
Conformers Submitted:
20
Selection Criteria:
target function
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Small ubiquitin-related modifier
Chain IDs:A
Chain Length:97
Number of Molecules:1
Biological Source:Caenorhabditis elegans
Ligand Molecules
Primary Citation
Structural and functional analysis of SMO-1, the SUMO homolog in Caenorhabditis elegans
PLoS ONE 12 e0186622 e0186622 (2017)
PMID: 29045470 DOI: 10.1371/journal.pone.0186622

Abstact

SUMO proteins are important post-translational modifiers involved in multiple cellular pathways in eukaryotes, especially during the different developmental stages in multicellular organisms. The nematode C. elegans is a well known model system for studying metazoan development and has a single SUMO homolog, SMO-1. Interestingly, SMO-1 modification is linked to embryogenesis and development in the nematode. However, high-resolution information about SMO-1 and the mechanism of its conjugation is lacking. In this work, we report the high-resolution three dimensional structure of SMO-1 solved by NMR spectroscopy. SMO-1 has flexible N-terminal and C-terminal tails on either side of a rigid beta-grasp folded core. While the sequence of SMO-1 is more similar to SUMO1, the electrostatic surface features of SMO-1 resemble more with SUMO2/3. SMO-1 can bind to typical SUMO Interacting Motifs (SIMs). SMO-1 can also conjugate to a typical SUMOylation consensus site as well as to its natural substrate HMR-1. Poly-SMO-1 chains were observed in-vitro even though SMO-1 lacks any consensus SUMOylation site. Typical deSUMOylation enzymes like Senp2 can cleave the poly-SMO-1 chains. Despite being a single gene, the SMO-1 structure allows it to function in a large repertoire of signaling pathways involving SUMO in C. elegans. Structural and functional features of SMO-1 studies described here will be useful to understand its role in development.

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