5XPS image
Deposition Date 2017-06-04
Release Date 2018-06-06
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5XPS
Keywords:
Title:
Crystal Structure of Transketolase in complex with erythrose-4-phosphate from Pichia Stipitis
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.07 Å
R-Value Free:
0.13
R-Value Work:
0.11
R-Value Observed:
0.11
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transketolase
Gene (Uniprot):TKT
Chain IDs:A
Chain Length:697
Number of Molecules:1
Biological Source:Scheffersomyces stipitis CBS 6054
Primary Citation
Evidence of Diradicals Involved in the Yeast Transketolase Catalyzed Keto-Transferring Reactions.
Chembiochem 19 2395 2402 (2018)
PMID: 30155962 DOI: 10.1002/cbic.201800378

Abstact

Transketolase (TK) catalyzes a reversible transfer of a two-carbon (C2) unit between phosphoketose donors and phosphoaldose acceptors, for which the group-transfer reaction that follows a one- or two-electron mechanism and the force that breaks the C2"-C3" bond of the ketose donors remain unresolved. Herein, we report ultrahigh-resolution crystal structures of a TK (TKps) from Pichia stipitis in previously undiscovered intermediate states and support a diradical mechanism for a reversible group-transfer reaction. In conjunction with MS, NMR spectroscopy, EPR and computational analyses, it is concluded that the enzyme-catalyzed non-Kekulé diradical cofactor brings about the C2"-C3" bond cleavage/formation for the C2 -unit transfer reaction, for which suppression of activation energy and activation and destabilization of enzymatic intermediates are facilitated.

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Primary Citation of related structures
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