5XOX image
Deposition Date 2017-05-31
Release Date 2017-07-12
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5XOX
Keywords:
Title:
Crystal structure of tRNA(His) guanylyltranserase from Saccharomyces cerevisiae
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
I 41
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:tRNA(His) guanylyltransferase
Gene (Uniprot):THG1
Chain IDs:A, B, C, D, E, F
Chain Length:243
Number of Molecules:6
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Primary Citation
Crystal structure of tRNA(His) guanylyltransferase from Saccharomyces cerevisiae
Biochem. Biophys. Res. Commun. 490 400 405 (2017)
PMID: 28623126 DOI: 10.1016/j.bbrc.2017.06.054

Abstact

tRNA maturation involves several steps, including processing, splicing, CCA addition, and posttranscriptional modifications. tRNAHis guanylyltransferase (Thg1) is the only enzyme known to catalyze templated nucleotide addition in the 3'-5' direction, unlike other DNA and RNA polymerases. For a better understanding of its unique catalytic mechanism at the molecular level, we determined the crystal structure of GTP-bound Thg1 from Saccharomyces cerevisiae at the maximum resolution of 3.0 Å. The structure revealed the enzyme to have a tetrameric conformation that is well conserved among different species, and the GTP molecule was clearly bound at the active site, coordinating with two magnesium ions. In addition, two flexible protomers at the potential binding site (PBS) for tRNAHis were observed. We suggest that the PBS of the tetramer could also be one of the sites for interaction with partner proteins.

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