5XOF image
Entry Detail
PDB ID:
5XOF
Keywords:
Title:
Crystal structure of human paired immunoglobulin-like type 2 receptor alpha with synthesized glycopeptide I
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-05-28
Release Date:
2017-10-25
Method Details:
Experimental Method:
Resolution:
1.96 Å
R-Value Free:
0.26
R-Value Work:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Paired immunoglobulin-like type 2 receptor alpha
Chain IDs:A, B, C, D
Chain Length:120
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Peptide from Nitric oxide synthase, endothelial
Chain IDs:E (auth: O), F (auth: P), G (auth: Q), H (auth: R)
Chain Length:7
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Structural and thermodynamic analyses reveal critical features of glycopeptide recognition by the human PILR alpha immune cell receptor.
J. Biol. Chem. 292 21128 21136 (2017)
PMID: 29046357 DOI: 10.1074/jbc.M117.799239

Abstact

Before entering host cells, herpes simplex virus-1 uses its envelope glycoprotein B to bind paired immunoglobulin-like type 2 receptor α (PILRα) on immune cells. PILRα belongs to the Siglec (sialic acid (SA)-binding immunoglobulin-like lectin)-like family, members of which bind SA. PILRα is the only Siglec member to recognize not only the sialylated O-linked sugar T antigen (sTn) but also its attached peptide region. We previously determined the crystal structure of PILRα complexed with the sTn-linked glycopeptide of glycoprotein B, revealing the simultaneous recognition of sTn and peptide by the receptor. However, the contribution of each glycopeptide component to PILRα binding was largely unclear. Here, we chemically synthesized glycopeptide derivatives and determined the thermodynamic parameters of their interaction with PILRα. We show that glycopeptides with different sugar units linking SA and peptides (i.e. "GlcNAc-type" and "deoxy-GlcNAc-type" glycopeptides) have lower affinity and more enthalpy-driven binding than the wild type (i.e. GalNAc-type glycopeptide). The crystal structures of PILRα complexed with these glycopeptides highlighted the importance of stereochemical positioning of the O4 atom of the sugar moiety. These results provide insights both for understanding the unique O-glycosylated peptide recognition by the PILRα and for the rational design of herpes simplex virus-1 entry inhibitors.

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