5XNL image
Deposition Date 2017-05-23
Release Date 2017-09-20
Last Version Date 2024-03-27
Entry Detail
PDB ID:
5XNL
Title:
Structure of stacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum
Biological Source:
Source Organism:
Pisum sativum (Taxon ID: 3888)
Method Details:
Experimental Method:
Resolution:
2.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein 8, chloroplastic
Gene (Uniprot):CAB8
Chain IDs:A (auth: 1), B (auth: 2), K (auth: G), R (auth: N), AA (auth: Y), CA (auth: 5), DA (auth: 6), MA (auth: g), TA (auth: n), CB (auth: y)
Chain Length:232
Number of Molecules:10
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Gene (Uniprot):Lhcb3*1
Chain IDs:C (auth: 3), EA (auth: 7)
Chain Length:243
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Light harvesting chlorophyll a/b-binding protein Lhcb6, CP24
Chain IDs:D (auth: 4), FA (auth: 8)
Chain Length:210
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II protein D1
Gene (Uniprot):psbA
Chain IDs:E (auth: A), GA (auth: a)
Chain Length:344
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP47 reaction center protein
Gene (Uniprot):psbB
Chain IDs:F (auth: B), HA (auth: b)
Chain Length:507
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP43 reaction center protein
Gene (Uniprot):psbC
Chain IDs:G (auth: C), IA (auth: c)
Chain Length:473
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II D2 protein
Gene (Uniprot):psbD
Chain IDs:H (auth: D), JA (auth: d)
Chain Length:353
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit alpha
Gene (Uniprot):psbE
Chain IDs:I (auth: E), KA (auth: e)
Chain Length:83
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit beta, PsbF
Chain IDs:J (auth: F), LA (auth: f)
Chain Length:39
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein H
Gene (Uniprot):psbH
Chain IDs:L (auth: H), NA (auth: h)
Chain Length:73
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein I, PsbI
Chain IDs:M (auth: I), OA (auth: i)
Chain Length:36
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein J
Gene (Uniprot):psbJ
Chain IDs:N (auth: J), PA (auth: j)
Chain Length:40
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein K
Gene (Uniprot):psbK
Chain IDs:O (auth: K), QA (auth: k)
Chain Length:61
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein L
Gene (Uniprot):psbL
Chain IDs:P (auth: L), RA (auth: l)
Chain Length:38
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein M
Gene (Uniprot):psbM
Chain IDs:Q (auth: M), SA (auth: m)
Chain Length:34
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Oxygen-evolving enhancer protein 1, chloroplastic
Gene (Uniprot):PSBO
Chain IDs:S (auth: O), UA (auth: o)
Chain Length:248
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Oxygen-evolving enhancer protein 2, chloroplastic
Gene (Uniprot):PSBP
Chain IDs:T (auth: P), VA (auth: p)
Chain Length:186
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Oxygen-evolving enhancer protein 3
Gene (Uniprot):psbQ
Chain IDs:U (auth: Q), WA (auth: q)
Chain Length:148
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Light harvesting chlorophyll a/b-binding protein Lhcb4, CP29
Chain IDs:V (auth: R), XA (auth: r)
Chain Length:246
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Light harvesting chlorophyll a/b-binding protein Lhcb5, CP26
Chain IDs:W (auth: S), YA (auth: s)
Chain Length:244
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein T
Gene (Uniprot):psbT
Chain IDs:X (auth: T), ZA (auth: t)
Chain Length:35
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein W
Chain IDs:Y (auth: W), AB (auth: w)
Chain Length:54
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein X
Chain IDs:Z (auth: X), BB (auth: x)
Chain Length:86
Number of Molecules:2
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein Z
Gene (Uniprot):psbZ
Chain IDs:BA (auth: Z), DB (auth: z)
Chain Length:62
Number of Molecules:2
Biological Source:Pisum sativum
Primary Citation
Structure and assembly mechanism of plant C2S2M2-type PSII-LHCII supercomplex
Science 357 815 820 (2017)
PMID: 28839073 DOI: 10.1126/science.aan0327

Abstact

In plants, the photosynthetic machinery photosystem II (PSII) consists of a core complex associated with variable numbers of light-harvesting complexes II (LHCIIs). The supercomplex, comprising a dimeric core and two strongly bound and two moderately bound LHCIIs (C2S2M2), is the dominant form in plants acclimated to limited light. Here we report cryo-electron microscopy structures of two forms of C2S2M2 (termed stacked and unstacked) from Pisum sativum at 2.7- and 3.2-angstrom resolution, respectively. In each C2S2M2, the moderately bound LHCII assembles specifically with a peripheral antenna complex CP24-CP29 heterodimer and the strongly bound LHCII, to establish a pigment network that facilitates light harvesting at the periphery and energy transfer into the core. The high mobility of peripheral antennae, including the moderately bound LHCII and CP24, provides insights into functional regulation of plant PSII.

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