5XND image
Entry Detail
PDB ID:
5XND
Title:
Solution structure of the major fish allergen parvalbumin Sco j 1 derived from the Pacific mackerel
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-05-22
Release Date:
2017-12-27
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
target function
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Parvalbumin beta
Chain IDs:A
Chain Length:114
Number of Molecules:1
Biological Source:Scomber japonicus
Ligand Molecules
Primary Citation
Solution structure of the major fish allergen parvalbumin Sco j 1 derived from the Pacific mackerel
Sci Rep 7 17160 17160 (2017)
PMID: 29215073 DOI: 10.1038/s41598-017-17281-6

Abstact

Although fish is an important part of the human diet, it is also a common source of food allergy. The major allergen in fish is parvalbumin, a well-conserved Ca2+-binding protein found in the white muscle of many fish species. Here, we studied the solution structure of the parvalbumin Sco j 1, derived from the Pacific mackerel, using nuclear magnetic resonance spectroscopy. We mapped the IgE-binding epitope proposed in a recent study onto the present structure. Interestingly, three of four residues, which were elucidated as key residues of the IgE-binding epitope, were exposed to solvent, whereas one residue faced the inside of the molecule. We expect that this solution structure can be used in future studies attempting to analyze the various IgE-binding modes of these allergens.

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Primary Citation of related structures